Based on Cardinale & Abeles, Biochemistry 7:3970 (1968)
Proline racemase, a bacterial enzyme, catalyzes the interconversion
of D and L-proline. The Km
values for D and L-proline are 2.3 mM and 3.8 mM respectively. The
maximal velocity is 8 x 10-3
mol/mg per min for L-proline. Various compounds have been tested as inhibitors
of the enzymes. Their structure and extent of inhibition are indicated
below.
|
|
|
Pipecolate |
|
|
Pyrrole-2-carboxylate |
3.6 x 10-4 |
50 |
2-Thiophenecarboxylate |
|
|
2-Furoate |
|
|
Tetrahydrofuroate |
|
|
1. Write the reaction catalyzed by proline racemase. What is the equilibrium constant for this reaction? What would be a reasonable structure for the transition state?
2. Using graph paper draw a Lineweaver-Burk Plot (1/v vs. l/[S]) for the uninhibited enzyme. Label the axes appropriately. On the same sheet draw the plot expected when 3.6 x 10-4M pyrrole-2-carboxylate is present as a competitive inhibitor.
3. Calculate the catalytic constant Kcat for proline racemase. The enzyme is composed of two identical subunits each with a molecular weight of 38,000 daltons.
4. Rank the five compounds listed above in order of their
inhibitory action. Explain why the best inhibitor has a Ki
approximately 160 times lower than the Km
values for proline.