CHEM-527  Introductory Biochemistry
Problem No. 2
Inhibition of Proline Racemase

Based on Cardinale & Abeles, Biochemistry 7:3970 (1968)

Proline racemase, a bacterial enzyme, catalyzes the interconversion of D and L-proline. The Km values for D and L-proline are 2.3 mM and 3.8 mM respectively.  The maximal velocity is 8 x 10-3 mol/mg per min for L-proline. Various compounds have been tested as inhibitors of the enzymes. Their structure and extent of inhibition are indicated below.
 

Inhibitor
Concentration [M]
Percent Inhibition*

Pipecolate
1.1 x 10-1
18

Pyrrole-2-carboxylate
5.7 x 10-2

3.6 x 10-4

98

50


2-Thiophenecarboxylate
5.7 x 10-2
73

2-Furoate
5.7 x 10-2
11

Tetrahydrofuroate
1.1 x 10-2
10
                       * L-Proline concentration was 5.7 x 10-2 M

1. Write the reaction catalyzed by proline racemase. What is the equilibrium constant for this reaction? What would be a reasonable structure for the transition state?

2. Using graph paper draw a Lineweaver-Burk Plot (1/v vs. l/[S]) for the uninhibited enzyme. Label the axes appropriately. On the same sheet draw the plot expected when 3.6 x 10-4M pyrrole-2-carboxylate is present as a competitive inhibitor.

3. Calculate the catalytic constant Kcat for proline racemase. The enzyme is composed of two identical subunits each with a molecular weight of 38,000 daltons.

4. Rank the five compounds listed above in order of their inhibitory action. Explain why the best inhibitor has a Ki approximately 160 times lower than the Km values for proline.



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Last updated: 23 September 1999 by Hal White
Copyright 1999, Department of Chemistry and Biochemistry, University of Delaware, Newark, DE  19716