COMPUTER IMAGING IN BIOLOGY
(COURSE SYLLABUS- Fall 2003)
Lectures: Mondays 2:30-3:20 PM 051 Mckinly
Laboratories: Weds. & Fri 2:00-4:00 PM 051&043 Mckinly
Instructor: Dr. Roger Wagner Phone: 831-2284
321 Wolf Hall, 005 Mckinly Lab. E-mail: rags@udel.edu
Course Web Page: http://www.udel.edu/Biology/Wags/b667/computer.htm
Sept. 3 |
Wed. |
Lect. |
Course Intro. Adobe Photoshop 6.0, Image Processing Toolkit 4.0 |
Sept. 5 |
Fri. |
Lect. |
Image Acquisition & Hardcopy Output (043 Mckinly) |
Sept. 8 |
Mon. |
|
Image Processing Systems, Image Aquistition, Digital Images (bits & pixels), Image File Formats |
Sept. 10 |
Wed. |
Lab. |
Adobe Photoshop Exercise #1 "Creating a Test
Figure" |
Sept. 12 |
Fri. |
Lab. |
Adobe Photoshop Exercise #2 "Selection" |
Sept. 15 |
Mon.. |
Lect. |
Intensity Transformation Functions-Point Operations and Spatial Convolution |
Sept. 17 |
Wed. |
Lab. |
Adobe Photoshop Exercise #3 "Layers" |
Sept. 19 |
Fri.. |
Lab. |
Adobe Photoshop Exercise #4 "Cutting and Pasting" |
Sept. 22 |
Mon. |
Lect. |
Segmentation,Thresholding and Binary Image Editing |
Sept. 24 |
Wed. |
Lab. |
Adobe
Photoshop Exercise #5 "Channels and Masks"
|
Sept. 26 |
Fri. |
Lab. |
Adobe Photoshop Exercise #6 "Colorizing a Gray Scale Image" |
Sept. 29 |
Mon. |
Lect. |
Fundamentals of Light and Electron Microscopy |
Oct. 1 |
Wed. |
Lab. |
Adobe Photoshop Exercise#7 "Actions, Batch
Operation and Animation"
|
Oct. 3 |
Fri. |
Lab. |
Processing Exercise #1 " Intensity Transformation Functions" |
Oct. 6 |
Mon. |
Lab |
Image Analysis: Global Properties
|
Oct. 8 |
Wed. |
Lab. |
Processing Exercise #2 "Processing
in Frequency Space"
|
Oct. 10 |
Fri. |
Lab. |
Processing Exercise #3: "Segmentation & Thresholding" |
Oct. 13 |
Mon. |
Lect. |
Image Analysis: Feature Properties |
Oct. 15 |
Wed. |
Lab. |
Processing Exercise # 4"Binary
Image Editing"
|
Oct. 17 |
Fri.. |
Lab. |
Processing Exercise #5 "Boolean Logic Operators" |
Oct. 20 |
Mon. |
Lect. |
Confocal Microscopy: (Dr. Czymmek) |
Oct. 22 |
Wed. |
Lab. |
Processing Exercise #6 "Stereology and Global Parameters" |
Oct. 24 |
Fri. |
Lab. |
Processing Exercise #7 "Feature-Specific
Measurements"
|
Oct. 27 |
Mon. |
Lect. |
Image Analysis:Analysis of Electron Spectroscopic Data |
Oct. 29. |
Wed. |
Lab. |
Processing Exercise #8 "Preparation of Anaglyph Stereopairs" |
Oct. 31. |
Fri. |
|
Processing Exercise #9 "Electron Spectroscopic Analysis" |
Nov. 3. |
Mon. |
Lect. |
Three Dimensional Modeling and Rendering |
Nov. 5 |
Wed. |
Lab. |
Processing Exercise #9 Electron Spectroscopic Analysis |
Nov. 7 |
Fri. |
Lab. |
3D Modeling and Rendering |
Nov. 10 |
Mon. |
Lab. |
3D Modeling and Rendering |
Nov. 12th-Dec. 10th - work on projects and presentations |